PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g064990.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 252aa    MW: 29828.8 Da    PI: 7.7717
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g064990.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.67.5e-37241162103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++ ++++sw e +n+fvv+ + efak++Lp+yFkh+nf+SFvRQLn+YgFkk+  e+         weF++++Fkkg+k+
  Sopim11g064990.0.1  24 FLTKTYQLVDDPSSDHIVSWGEYENTFVVWRPPEFAKDLLPNYFKHNNFSSFVRQLNTYGFKKIVPER---------WEFANEHFKKGQKH 105
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r++s+
  Sopim11g064990.0.1 106 LLCEIQRRRST 116
                         ********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.6E-5820113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.2E-3821113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.8E-3421113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.3E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MASSSTCGDQ EMIFTMQKAM VAPFLTKTYQ LVDDPSSDHI VSWGEYENTF VVWRPPEFAK  60
DLLPNYFKHN NFSSFVRQLN TYGFKKIVPE RWEFANEHFK KGQKHLLCEI QRRRSTPQQL  120
HHLTPYQEHI TRSIYHQEIQ NPSSTVDHDI LLALTQDNER LRKRNIVLLS ELTRMKNLYN  180
DIIYFIQNHV KPVEEKSRVF LLNGGLNHHH RQVHNEDHEE PKSDKVKLFG VSLCGKKRLY  240
HERIDQEELE C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-232111617123Heat shock factor protein 1
5d5v_D6e-232111326129Heat shock factor protein 1
5d5v_B6e-232111326129Heat shock factor protein 1
5d5u_B6e-232111326129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251349.20.0PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ9C6353e-79HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLK4D9B20.0K4D9B2_SOLLC; Uncharacterized protein
STRINGSolyc11g064990.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-80heat shock transcription factor B4